pretty sure corolla 1zze motor has a little different intake that u have to modify?

2003 pontiac vibe fwd 1zze motor manual transmission did engine swap has engine codes running rough no dash lights not the switch checked that. but when i plug obd2 scanner dash lights come on runs great unplug scanner runs rough no dash lights but when i plug back in runs great any one happen to th...

could be the clutch it sounds like you got gear oil in tranny clutch fluid still full